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Because Africa was isolated by water, Laurasian groups of mammals such as insectivores, rodents, lagomorphs, carnivorans and ungulates could not reach Africa for much of the early to mid-Cenozoic. Instead, the niches occupied by those groups on the northern continents were filled by various groups of afrotheres via the process of convergent evolution. The small insectivorous afrotheres such as elephant shrews, golden moles, and tenrecs filled the niches of insectivores, the hyraxes filled the roles of rodents and lagomorphs, the aardvarks filled the roles of various medium size ant-eating mammals (anteaters, armadillos, pangolins, echidnas, numbats, etc.) found on other continents throughout the Cenozoic, and proboscideans (elephants and their relatives) filled the roles of large herbivores such as hippos and rhinos. The sirenians quickly became aquatic and started spreading to other parts of the world by water, evolving convergently with the other groups of marine mammals. In addition to their similarity with Laurasian mammals in North America, Europe, and Asia, many afrotheres also exhibit convergent evolution with groups of mammals that evolved and lived exclusively in South America, which was also an island continent for much of the Cenozoic.

The common ancestry of these animals was not recognized until the late 1990s